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GEDIMAP IDP2250 (個体群)
個体群名T_hakonensis_38_Shimanto
魚種ウグイ Tribolodon hakonensis (コイ科) fish base BOLD
場所高知県 (四万十川(渡川)水系)
解析領域cyt_b (758 bp)
環境情報不明
移植状況自然分布
出典Watanabe, K., H. Sakai, T. Sanada and M. Nishida (2018) Comparative phylogeography of diadromous and freshwater daces of the genus Tribolodon (Cyprinidae). Ichthyol Res., 65 GEDIMAPR603
多様度指数A:6, ne:5.00, h:0.8889, SE_h:0.0754, pi:0.003606, SE_pi:0.054885

h13 = [ GEDIMAPH3871, DDBJLC277640 ] ; h14 = [ GEDIMAPH3872, DDBJLC277644 ] ; h15 = [ GEDIMAPH3873, DDBJLC277643 ] ; h16 = [ GEDIMAPH3874, DDBJLC277639 ] ; h17 = [ GEDIMAPH3875, DDBJLC277638 ] ; h18 = [ GEDIMAPH3876, DDBJLC277642 ]
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GEDIMAP IDP1931 (個体群)
個体群名O_platypus_Kochi_Shimanto
魚種オイカワ Zacco platypus (コイ科) fish base BOLD
場所高知県 (四万十川(渡川)水系)
解析領域cyt_b (1004 bp)
環境情報不明
移植状況移植個体群である可能性が高い(国内移入)
出典 未発表データ: GEDIMAPR578
多様度指数A:3, ne:2.27, h:0.7000, SE_h:0.2184, pi:0.002789, SE_pi:0.000000

WJ08 = [ GEDIMAPH3117, DDBJLC019800 ] ; WJ46 = [ GEDIMAPH3155, DDBJLC019838 ] ; WJ47 = [ GEDIMAPH3156, DDBJLC019839 ]
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GEDIMAP IDP1842 (個体群)
個体群名L_reini_Kochi_Shimanto_45
魚種アカザ Liobagrus reini (アカザ科) fish base BOLD
場所高知県 (四万十川(渡川)水系)
解析領域cyt_b (580 bp)
環境情報河川中流
移植状況自然分布
出典Nakagawa, N., S. Seki, T. Ishikawa and K. Watanabe (2015) Genetic population structure of the Japanese torrent catfish Liobagrus reinii (Amblycipitidae) inferred from mitochondrial cytochrome b variations. Ichthyol. Res. GEDIMAPR568
多様度指数A:1, ne:1.00, h:0.0000, SE_h:0.0000, pi:0.000000, SE_pi:0.000000

H41 = [ GEDIMAPH3096, DDBJLC064951 ]
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GEDIMAP IDP1841 (個体群)
個体群名L_reini_Kochi_Iyoki_44
魚種アカザ Liobagrus reini (アカザ科) fish base BOLD
場所高知県 (その他水系)
解析領域cyt_b (580 bp)
環境情報河川中流
移植状況自然分布
出典Nakagawa, N., S. Seki, T. Ishikawa and K. Watanabe (2015) Genetic population structure of the Japanese torrent catfish Liobagrus reinii (Amblycipitidae) inferred from mitochondrial cytochrome b variations. Ichthyol. Res. GEDIMAPR568
多様度指数A:1, ne:1.00, h:0.0000, SE_h:0.0000, pi:0.000000, SE_pi:0.000000

H41 = [ GEDIMAPH3096, DDBJLC064951 ]
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GEDIMAP IDP1840 (個体群)
個体群名L_reini_Kochi_Niyodo_43
魚種アカザ Liobagrus reini (アカザ科) fish base BOLD
場所高知県 (仁淀川水系)
解析領域cyt_b (580 bp)
環境情報河川中流
移植状況自然分布
出典Nakagawa, N., S. Seki, T. Ishikawa and K. Watanabe (2015) Genetic population structure of the Japanese torrent catfish Liobagrus reinii (Amblycipitidae) inferred from mitochondrial cytochrome b variations. Ichthyol. Res. GEDIMAPR568
多様度指数A:2, ne:1.28, h:0.2500, SE_h:0.1802, pi:0.018534, SE_pi:0.162268

H05 = [ GEDIMAPH3060, DDBJLC064933 ] ; H41 = [ GEDIMAPH3096, DDBJLC064951 ]
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GEDIMAP IDP1839 (個体群)
個体群名L_reini_Kochi_Mononobe_42
魚種アカザ Liobagrus reini (アカザ科) fish base BOLD
場所高知県 (物部川水系)
解析領域cyt_b (580 bp)
環境情報河川中流
移植状況自然分布
出典Nakagawa, N., S. Seki, T. Ishikawa and K. Watanabe (2015) Genetic population structure of the Japanese torrent catfish Liobagrus reinii (Amblycipitidae) inferred from mitochondrial cytochrome b variations. Ichthyol. Res. GEDIMAPR568
多様度指数A:1, ne:1.00, h:0.0000, SE_h:0.0000, pi:0.000000, SE_pi:0.000000

H05 = [ GEDIMAPH3060, DDBJLC064933 ]
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GEDIMAP IDP1838 (個体群)
個体群名L_reini_Kochi_Ioki_41
魚種アカザ Liobagrus reini (アカザ科) fish base BOLD
場所高知県 (その他水系)
解析領域cyt_b (580 bp)
環境情報河川中流
移植状況自然分布
出典Nakagawa, N., S. Seki, T. Ishikawa and K. Watanabe (2015) Genetic population structure of the Japanese torrent catfish Liobagrus reinii (Amblycipitidae) inferred from mitochondrial cytochrome b variations. Ichthyol. Res. GEDIMAPR568
多様度指数A:1, ne:1.00, h:0.0000, SE_h:0.0000, pi:0.000000, SE_pi:0.000000

H41 = [ GEDIMAPH3096, DDBJLC064951 ]
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GEDIMAP IDP1788 (個体群)
個体群名Smt10
魚種アカメ Lates japonicus (アカメ科) fish base BOLD
場所高知県 (四万十川(渡川)水系)
解析領域CR (879 bp)
環境情報汽水
移植状況自然分布
出典Takahashi, H., N. Takeshita, H. Tanoue, S.Ueda, H. Takeshima, T. Komatsu, I. Kinoshita and M. Nishida (2015) Severely depleted genetic diversity and population structure of a large predatory marine fish (Lates japonicus) endemic to Japan. Conserv. Genet. GEDIMAPR562
多様度指数A:4, ne:2.78, h:0.7111, SE_h:0.1175, pi:0.002655, SE_pi:0.047076

HapJ1 = [ GEDIMAPH3052 ] ; HapJ2 = [ GEDIMAPH3053 ] ; HapJ3 = [ GEDIMAPH3054 ] ; HapJ4 = [ GEDIMAPH3055 ]
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GEDIMAP IDP1787 (個体群)
個体群名Smt09
魚種アカメ Lates japonicus (アカメ科) fish base BOLD
場所高知県 (四万十川(渡川)水系)
解析領域CR (879 bp)
環境情報汽水
移植状況自然分布
出典Takahashi, H., N. Takeshita, H. Tanoue, S.Ueda, H. Takeshima, T. Komatsu, I. Kinoshita and M. Nishida (2015) Severely depleted genetic diversity and population structure of a large predatory marine fish (Lates japonicus) endemic to Japan. Conserv. Genet. GEDIMAPR562
多様度指数A:4, ne:3.24, h:0.7778, SE_h:0.1100, pi:0.002781, SE_pi:0.053382

HapJ1 = [ GEDIMAPH3052 ] ; HapJ2 = [ GEDIMAPH3053 ] ; HapJ3 = [ GEDIMAPH3054 ] ; HapJ4 = [ GEDIMAPH3055 ]
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GEDIMAP IDP1786 (個体群)
個体群名Kag02
魚種アカメ Lates japonicus (アカメ科) fish base BOLD
場所高知県 (その他水系)
解析領域CR (879 bp)
環境情報汽水
移植状況自然分布
出典Takahashi, H., N. Takeshita, H. Tanoue, S.Ueda, H. Takeshima, T. Komatsu, I. Kinoshita and M. Nishida (2015) Severely depleted genetic diversity and population structure of a large predatory marine fish (Lates japonicus) endemic to Japan. Conserv. Genet. GEDIMAPR562
多様度指数A:3, ne:2.18, h:0.5909, SE_h:0.1079, pi:0.002551, SE_pi:0.040588

HapJ1 = [ GEDIMAPH3052 ] ; HapJ2 = [ GEDIMAPH3053 ] ; HapJ4 = [ GEDIMAPH3055 ]
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GEDIMAP IDP1243 (個体群)
個体群名L_petersii_Kochi_21_SI
魚種シロウオ Leucopsarion petersii (ハゼ科) fish base BOLD
場所高知県 四万十 (その他水系)
解析領域cyt_b (1141 bp)
環境情報汽水
移植状況自然分布
出典Kokita, T. and K. Nohara (2011) Phylogeography and historical demography of the anadromous fish Leucopsarion petersii in relation to geological history and oceanography around the Japanese Archipelago. Molecular Ecology, 20: 143-164. GEDIMAPR431
多様度指数A:5, ne:5.00, h:1.0000, SE_h:0.1265, pi:0.007011, SE_pi:0.000000

H75 = [ GEDIMAPH1946, DDBJAB562230 ] ; H76 = [ GEDIMAPH1947, DDBJAB562231 ] ; H77 = [ GEDIMAPH1948, DDBJAB562232 ] ; H78 = [ GEDIMAPH1949, DDBJAB562233 ] ; H79 = [ GEDIMAPH1950, DDBJAB562234 ]
全詳細
GEDIMAP IDP1074 (個体群)
個体群名S_japonicus_Kochi_KOC
魚種ボウズハゼ Sicyopterus japonicus (ハゼ科) fish base BOLD
場所高知県 (物部川水系)
解析領域CR (448 bp)
環境情報不明
移植状況自然分布
出典Watanabe, S., M. Iida, Y. Kimura, E. Feunteun and K. Tsukamoto (2006) Genetic diversity of Sicyopterus japonicus as revealed by mitochondrial DNA sequencing. Coastal Marine Science 30: 473-479. GEDIMAPR391
多様度指数A:22, ne:22.00, h:1.0000, SE_h:0.0137, pi:0.013886, SE_pi:0.075869

08 = [ GEDIMAPH1591, DDBJAB244799 ] ; 25 = [ GEDIMAPH1608, DDBJAB245164 ] ; 26 = [ GEDIMAPH1609, DDBJAB245165 ] ; 27 = [ GEDIMAPH1610, DDBJAB245166 ] ; 28 = [ GEDIMAPH1611, DDBJAB245167 ] ; 29 = [ GEDIMAPH1612, DDBJAB245168 ] ; 30 = [ GEDIMAPH1613, DDBJAB245169 ] ; 31 = [ GEDIMAPH1614, DDBJAB245170 ] ; 32 = [ GEDIMAPH1615, DDBJAB245171 ] ; 33 = [ GEDIMAPH1616, DDBJAB245172 ] ; 34 = [ GEDIMAPH1617, DDBJAB245173 ] ; 35 = [ GEDIMAPH1618, DDBJAB245174 ] ; 36 = [ GEDIMAPH1619, DDBJAB245175 ] ; 37 = [ GEDIMAPH1620, DDBJAB245176 ] ; 38 = [ GEDIMAPH1621, DDBJAB245177 ] ; 39 = [ GEDIMAPH1622, DDBJAB245178 ] ; 40 = [ GEDIMAPH1623, DDBJAB245179 ] ; 41 = [ GEDIMAPH1624, DDBJAB245180 ] ; 42 = [ GEDIMAPH1625, DDBJAB245181 ] ; 43 = [ GEDIMAPH1626, DDBJAB245182 ] ; 44 = [ GEDIMAPH1627, DDBJAB245183 ] ; 45 = [ GEDIMAPH1628, DDBJAB245184 ]
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GEDIMAP IDP1055 (個体群)
個体群名R_sp__DA_Kochi_Kumomo_KUM
魚種クロヨシノボリ(黒色型) Rhinogobius sp. DA (ハゼ科) fish base BOLD
場所高知県 (その他水系)
解析領域CR (316 bp)
環境情報不明
移植状況自然分布
出典Ohara, K., M. Takagi, M. Hashimoto, K. Miyazaki and K. Hirashima (2008) DNA markers indicate low genetic diversity and high genetic divergence in the landlocked freshwater goby, Rhinogobius sp. YB, in the Ryukyu Archipelago, Japan. Zool. Sci., 25: 391-400 GEDIMAPR332
多様度指数A:6, ne:5.33, h:0.9286, SE_h:0.0844, pi:0.008816, SE_pi:0.111536

hap37 = [ GEDIMAPH1576, DDBJAB292395 ] ; hap38 = [ GEDIMAPH1577, DDBJAB292396 ] ; hap39 = [ GEDIMAPH1578, DDBJAB292397 ] ; hap40 = [ GEDIMAPH1579, DDBJAB292398 ] ; hap41 = [ GEDIMAPH1580, DDBJAB292399 ] ; hap42 = [ GEDIMAPH1581, DDBJAB292400 ]
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GEDIMAP IDP1025 (個体群)
個体群名P_oxycephalus_jouyi_Kochi_Yoshino
魚種タカハヤ Phoxinus oxycephalus jouyi (コイ科) fish base BOLD
場所高知県 (吉野川水系)
解析領域cyt_b, CR (1788 bp)
環境情報河川上流
移植状況自然分布
出典Sasaki, T., Y. P. Kartavtsev, S. N. Chiba, T. Uematsu, V. V. Sviridov and N. Hanzawa (2007) Genetic divergence and phylogenetic independence of Far Eastern species in subfamily Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analyses. Genes Genet. Syst., 82: 329-340. GEDIMAPR369
多様度指数A:1, ne:1.00, h:0.0000, SE_h:0.0000, pi:0.000000, SE_pi:0.000000

Poj_YOS = [ GEDIMAPH1341, DDBJAB198971,AB207016 ]
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GEDIMAP IDP991 (個体群)
個体群名O_latipes_Kochi_Nakamura
魚種メダカ Oryzias latipes (メダカ科) fish base BOLD
場所高知県 四万十市(旧中村市) (四万十川(渡川)水系)
解析領域cyt_b (1141 bp)
環境情報不明
移植状況自然分布
出典Takehana, Y., N. Nagai, M. Matsuda, K. Tsuchiya, and M. Sakaizumi (2003) Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zool. Sci., 20: 1279-1291 GEDIMAPR199
多様度指数A:1, ne:1.00, h:0.0000, SE_h:0.0000, pi:0.000000, SE_pi:0.000000

B42_Nakamu = [ GEDIMAPH1509, DDBJAB084747 ]
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GEDIMAP IDP990 (個体群)
個体群名O_latipes_Kochi_Susaki
魚種メダカ Oryzias latipes (メダカ科) fish base BOLD
場所高知県 須崎市 (その他水系)
解析領域cyt_b (1141 bp)
環境情報不明
移植状況自然分布
出典Takehana, Y., N. Nagai, M. Matsuda, K. Tsuchiya, and M. Sakaizumi (2003) Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zool. Sci., 20: 1279-1291 GEDIMAPR199
多様度指数A:1, ne:1.00, h:0.0000, SE_h:0.0000, pi:0.000000, SE_pi:0.000000

B1d_Susaki = [ GEDIMAPH1461, DDBJAB084698 ]
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GEDIMAP IDP823 (個体群)
個体群名C_takatsuensis_Kochi
魚種イシドジョウ Cobitis takatsuensis (ドジョウ科) fish base BOLD
場所高知県 (四万十川(渡川)水系)
解析領域ND1 (725 bp)
環境情報不明
移植状況自然分布
出典Kitagawa, T., S.-R. Jeon, E. Kitagawa, M. Yoshioka, M. Kashiwagi and T. Okazaki (2005) Genetic relationships among the Japanese and Korean striated spined loach complex (Cobitidae: Cobitis) and their phylogenetic positions. Ichthyol. Res., 52: 111-122 GEDIMAPR228
多様度指数A:1, ne:1.00, h:0.0000, SE_h:0.0000, pi:0.000000, SE_pi:0.000000

C_t_Shikok = [ GEDIMAPH1238, DDBJAB039343 ]
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GEDIMAP IDP821 (個体群)
個体群名C_biwae_Kochi_Uranouchi
魚種シマドジョウ Cobitis biwae (ドジョウ科) fish base BOLD
場所高知県 (その他水系)
解析領域ND1 (725 bp)
環境情報不明
移植状況自然分布
出典Kitagawa, T., S.-R. Jeon, E. Kitagawa, M. Yoshioka, M. Kashiwagi and T. Okazaki (2005) Genetic relationships among the Japanese and Korean striated spined loach complex (Cobitidae: Cobitis) and their phylogenetic positions. Ichthyol. Res., 52: 111-122 GEDIMAPR228
多様度指数A:1, ne:1.00, h:0.0000, SE_h:0.0000, pi:0.000000, SE_pi:0.000000

C_b_Kochi = [ GEDIMAPH1236, DDBJAB039347 ]
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GEDIMAP IDP631 (個体群)
個体群名C_carpio_Kouchi_Shimanto
魚種コイ Cyprinus carpio (コイ科) fish base BOLD
場所高知県 中村平野 (四万十川(渡川)水系)
解析領域CR (940 bp)
環境情報河川中流
移植状況不明
出典Mabuchi, K., H. Seno and M. Nishida (2008) Mitochondrial DNA analysis reveals cryptic large-scale invasion of non-native genotypes of common carp (Cyprinus carpio) in Japan. Mol. Ecol., 17: 796-809 GEDIMAPR313
多様度指数A:6, ne:5.44, h:0.9524, SE_h:0.0955, pi:0.018237, SE_pi:0.216832

a1 = [ GEDIMAPH973, DDBJAB307037 ] ; a7 = [ GEDIMAPH979, DDBJAB307043 ] ; a8 = [ GEDIMAPH980, DDBJAB307044 ] ; b1 = [ GEDIMAPH992, DDBJAB307056 ] ; c1 = [ GEDIMAPH994, DDBJAB307058 ] ; e1 = [ GEDIMAPH998, DDBJAB307062 ]
全詳細
GEDIMAP IDP190 (個体群)
個体群名C_biwae_Kouchi
魚種シマドジョウ Cobitis biwae (ドジョウ科) fish base BOLD
場所高知県 (その他水系)
解析領域cyt_b (725 bp)
環境情報河川中流
移植状況自然分布
出典Kitagawa, T., M. Watanabe, T. Kobayashi, M. Yoshioka, M. Kashiwagi and T. Okazaki (2001) Two genetically divergent groups in the Japanese spined loach, Cobitis takatsuensis, and their phylogenetic relationships among Japanese Cobitis inferred from mitochondrial DNA analyses. Zool. Sci., 18: 249-259 GEDIMAPR157
多様度指数A:1, ne:1.00, h:0.0000, SE_h:0.0000, pi:0.000000, SE_pi:0.000000

CbiwaeK = [ GEDIMAPH368, DDBJAB039347 ]

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